Research Catalog
The phylogenetic handbook : a practical approach to phylogenetic analysis and hypothesis testing / edited by Philippe Lemey, Marco Salemi, Anne-Mieke Vandamme.
- Title
- The phylogenetic handbook : a practical approach to phylogenetic analysis and hypothesis testing / edited by Philippe Lemey, Marco Salemi, Anne-Mieke Vandamme.
- Publication
- Cambridge, UK ; New York : Cambridge University Press, c2009.
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| Status | Vol/Date | Format | Access | Call Number | Item Location |
|---|---|---|---|---|---|
| 2009 | Text | Request in advance | QP624 .P486 2009 2009 | Off-site |
Details
- Additional Authors
- Description
- xxvi, 723 p. : ill. (some col.); 26 cm.
- Summary
- This book provides a comprehensive introduction to the theory and practice of nucleotide and protein phylogenetic analysis--[P. 4 of cover].
- Subjects
- Bibliography (note)
- Includes bibliographical references (p. 672-708) and index.
- Processing Action (note)
- committed to retain
- Contents
- Section 1 Introduction : Basic concepts of molecular evolution / Anne-Mieke Vandamme -- Section II Data preparation : Sequence databases and database searching : Theory / Guy Bottu -- Practice / Marc Van Ranst, Philippe Lemey -- Multiple sequence alignment : Theory / Des Higgins, Philippe Lemey -- Practice / Des Higgins, Philippe Lemey -- Section III Phylogenetic inference : Genetic distances and nucleotide substitution models : Theory / Korbinian Strimmer, Arndt von Haeseler -- Practice / Marco Salemi -- Phylogenetic inference based on distance methods : Theory / Yves Van de Peer -- Practice / Marco Salemi -- Phylogenetic inference using maximum likelihood methods : Theory / Heiko A. Schmidt, Arndt von Haesler -- Practice / Heiko A. Schmidt, Arndt von Haeseler -- Bayesian phylogenetic analysis using MrBayes : Theory / Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- Practice / Fredrik Ronquist, Paul van der Mark, John P. Huelsenbeck -- Phylogeny inference based on parsimony and other methods using PAUP* : Theory / David L. Swofford, Jack Sullivan -- Practice / David L. Swofford, Jack Sullivan -- Phylogenetic analysis using protein sequences : Theory / Fred R. Opperdoes -- Practices / Fred R. Opperdoes, Philippe Lemey -- Section IV Testing models and trees : Theory / David Posada -- Practice / David Posada -- Molecular clock analysis : Theory / Philippe Lemey, David Posada -- Practice / Philippe Lemey, David Posada -- Testing tree topologies : Theory / Heiko A. Schmidt -- Practice / Heiko A. Schmidt -- Section V Molecular adaptation : Natural selection and adaptation of molecular sequences / Oliver G. Pybus, Beth Shapiro -- Estimating selection pressures on alignments of coding sequences : Theory / Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Practice / Sergei L. Kosakovsky Pond, Art F.Y. Poon, Simon D.W. Frost -- Section VI Recombination : Introduction to recombination detection / Philippe Lemey, David Posada -- Detecting and characterizing individual recombination events : Theory / Mika Salminen, Darren Martin -- Practice / Mika Salminen, Darren Martin -- Section VII Population genetics : The coalescent : population genetic inference using genealogies / Allen Rodrigo -- Bayesian evolutionary analysis by sampling trees : Theory / Alexei J. Drummond, Andrew Rambaut -- Practice / Alexei J. Drummond, Andrew Rambaut -- Lamarc : estimating population genetic parameters from molecular data : Theory / Mary K. Kuhner -- Practice / Mary K. Kuhner -- Section VIII Additional topics : Assessing substitution saturation with Dambe : Theory / Xuhua Xia -- Practice / Xuhua Xia, Philippe Lemey -- Split networks. A tool for exploring complex evolutionary relationships in molecular data : Theory / Vincent Moulton, Katharina T. Huber -- Practice / Vincent Moulton, Katharina T. Huber.
- ISBN
- 9780521877107 (hbk.)
- 0521877105 (hbk.)
- 9780521730716 (pbk.)
- 0521730716 (pbk.)
- LCCN
- ^^2009464132
- OCLC
- 295002266
- SCSB-10019710
- Owning Institutions
- Harvard Library